Biocview "GraphsAndNetworks"

pathview
a tool set for pathway based data integration and visualization
nem
(Dynamic) Nested Effects Models and Deterministic Effects Propagation Networks to reconstruct phenotypic hierarchies
pshannon-bioc/graph
graph: A package to handle graph data structures
vgpprasad91/graph
graph: A package to handle graph data structures
GeneAnswers
Integrated Interpretation of Genes
cbg-ethz/pcNEM
Probabilistic combinatorial nested effects model
Gibbsdavidl/ProCoNA
Protein co-expression network analysis (ProCoNA).
ROntoTools
R Onto-Tools suite
nolanlab/spade
SPADE -- An analysis and visualization tool for Flow Cytometry
olimora/mySPADE
SPADE -- An analysis and visualization tool for Flow Cytometry

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