Man pages for romanhaa/cerebroApp
Interactive visualization of scRNA-seq data with Cerebro
| addPercentMtRibo | Add percentage of mitochondrial and ribosomal transcripts. |
| calculatePercentGenes | Calculate percentage of transcripts of gene list. |
| Cerebro_v1.3 | R6 class in which data sets will be stored for visualization... |
| dot-read_GMT_file | Read GMT file. |
| dot-send_enrichr_query | Gene enrichment using Enrichr. |
| exportFromSCE | Export SingleCellExperiment (SCE) object to Cerebro. |
| exportFromSeurat | Export Seurat object to Cerebro. |
| extractMonocleTrajectory | Extract trajectory from Monocle and add to Seurat object. |
| getEnrichedPathways | Get enriched pathways based on marker genes from EnrichR. |
| getMarkerGenes | Get marker genes for specified grouping variables in Seurat... |
| getMostExpressedGenes | Get most expressed genes for specified grouping variables in... |
| launchCerebro | Launch Cerebro interface. |
| launchCerebroV1.0 | Launch Cerebro v1.0 |
| launchCerebroV1.1 | Launch Cerebro v1.1 |
| launchCerebroV1.2 | Launch Cerebro v1.2 |
| launchCerebroV1.3 | Launch Cerebro v1.3 |
| performGeneSetEnrichmentAnalysis | Perform gene set enrichment analysis with GSVA. |
