All R packages

Found 34909 packages. Showing results 2901 to 2950.

Annotation Database Interface
Facilities for Filtering Bioconductor Annotation Resources
Code for Building Annotation Database Packages
Annotation translation functions
Client to access AnnotationHub resources
Transform public data resources into Bioconductor Data Structures
Annotate microarrays and perform cross-species gene expression analyses using flat file databases.
Annotation of Genomic Regions to Genomic Annotations
Implementation of gene expression anti-profiles
Estimate protein complex membership using AP-MS protein data
Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data Types
Access the ArrayExpress Microarray Database at EBI and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
ArrayExpress High Throughput Sequencing Processing Pipeline
multivariate outlier detection for expression array QA
Quality metrics report for microarray data sets
geneChip Analysis Package
Implementation of wave correction for arrays
Adaptive Robust Regression normalization for Illumina methylation data
Ancestry Specific Allele Frequency Estimation
Predict Acetylated Lysine Sites
Association Studies for multiple SNPs and multiple traits using Generalized Structured Equation Models
All sample mean normalization.
Analysis of alternative splicing using RNA-Seq
An R package for subset-based association analysis of heterogeneous traits and subtypes
Adaptive Signature Selection and InteGratioN (ASSIGN)
ATAC-seq Quality Control
Gene Expression Atlas query and gene set enrichment package.
Methods to Find the Gene Expression Modules that Represent the Drivers of Kauffman's Attractor Landscape
BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes
Bayesian Analysis of Chip-chip experiment
Controlling bias and inflation in association studies using the empirical null distribution
Bayesian Analysis of Differential Expression in RNA Sequencing Data
BadRegionFinder: an R/Bioconductor package for identifying regions with bad coverage
A Bayesian Approach for Geneset Selection
Flexible, isoform-level differential expression analysis
Extract read count signals from bam files
Bayesian ANalysis Of Compositional Covariance
R SDK for BaseSpace RESTful API
Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data
Basic peak calling on STARR-seq data
Batch Effects Quality Control Software
BayesKnockdown: Posterior Probabilities for Edges from Knockdown Data
Bayesian Analysis of ChIP-seq Data
BBCAnalyzer: an R/Bioconductor package for visualizing base counts
Predicting binding site consensus from ranked DNA sequences
Quality assessment and low-level analysis for Illumina BeadArray data
Normalization and reporting of Illumina SNP bead arrays
Compression of Illumina BeadArray data
BEAT - BS-Seq Epimutation Analysis Toolkit
Correct for batch effects in DNA methylation data

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