All R packages

Found 39458 packages. Showing results 4401 to 4450.

Bioconductor-mirror/RSVSim
RSVSim: an R/Bioconductor package for the simulation of structural variations
Bioconductor-mirror/rTANDEM
Interfaces the tandem protein identification algorithm in R
Bioconductor-mirror/RTCA
Open-source toolkit to analyse data from xCELLigence System (RTCA)
Bioconductor-mirror/RTCGA
The Cancer Genome Atlas Data Integration
Bioconductor-mirror/RTCGAToolbox
A new tool for exporting TCGA Firehose data
Bioconductor-mirror/RTN
Reconstruction of transcriptional networks and analysis of master regulators
Bioconductor-mirror/RTNsurvival
Survival analysis using transcriptional networks inferred by the RTN package
Bioconductor-mirror/RTopper
This package is designed to perform Gene Set Analysis across multiple genomic platforms
Bioconductor-mirror/rtracklayer
R interface to genome browsers and their annotation tracks
Bioconductor-mirror/Rtreemix
Rtreemix: Mutagenetic trees mixture models.
Bioconductor-mirror/rTRM
Identification of transcriptional regulatory modules from PPI networks
Bioconductor-mirror/rTRMui
A shiny user interface for rTRM
Bioconductor-mirror/RUVcorr
Removal of unwanted variation for gene-gene correlations and related analysis
Bioconductor-mirror/RUVnormalize
RUV for normalization of expression array data
Bioconductor-mirror/RUVSeq
Remove Unwanted Variation from RNA-Seq Data
Bioconductor-mirror/RWebServices
Expose R functions as web services through Java/Axis/Apache
Bioconductor-mirror/S4Vectors
S4 implementation of vectors and lists
Bioconductor-mirror/safe
Significance Analysis of Function and Expression
Bioconductor-mirror/sagenhaft
Collection of functions for reading and comparing SAGE libraries
Bioconductor-mirror/SAGx
Statistical Analysis of the GeneChip
Bioconductor-mirror/samExploreR
samExploreR package: high-performance read summarisation to count vectors with avaliability of sequencing depth reduction simulation
Bioconductor-mirror/sampleClassifier
Sample Classifier
Bioconductor-mirror/SamSPECTRAL
Identifies cell population in flow cytometry data.
Bioconductor-mirror/sangerseqR
Tools for Sanger Sequencing Data in R
Bioconductor-mirror/SANTA
Spatial Analysis of Network Associations
Bioconductor-mirror/sapFinder
A package for variant peptides detection and visualization in shotgun proteomics.
Bioconductor-mirror/saps
Significance Analysis of Prognostic Signatures
Bioconductor-mirror/savR
Parse and analyze Illumina SAV files
Bioconductor-mirror/sbgr
R Client for Seven Bridges Platform API
Bioconductor-mirror/SBMLR
SBML-R Interface and Analysis Tools
Bioconductor-mirror/SC3
Single-Cell Consensus Clustering
Bioconductor-mirror/Scale4C
Scale4C: an R/Bioconductor package for scale-space transformation of 4C-seq data
Bioconductor-mirror/SCAN.UPC
Single-channel array normalization (SCAN) and Universal exPression Codes (UPC)
Bioconductor-mirror/scater
Single-cell analysis toolkit for gene expression data in R
Bioconductor-mirror/scDD
Mixture modeling of single-cell RNA-seq data to indentify genes with differential distributions
Bioconductor-mirror/scde
Single Cell Differential Expression
Bioconductor-mirror/ScISI
In Silico Interactome
Bioconductor-mirror/scone
Single Cell Overview of Normalized Expression data
Bioconductor-mirror/scran
Methods for Single-Cell RNA-Seq Data Analysis
Bioconductor-mirror/scsR
SiRNA correction for seed mediated off-target effect
Bioconductor-mirror/segmentSeq
Methods for identifying small RNA loci from high-throughput sequencing data
Bioconductor-mirror/SELEX
Functions for analyzing SELEX-seq data
Bioconductor-mirror/SemDist
Information Accretion-based Function Predictor Evaluation
Bioconductor-mirror/SEPA
SEPA
Bioconductor-mirror/seq2pathway
a novel tool for functional gene-set (or termed as pathway) analysis of next-generation sequencing data
Bioconductor-mirror/SeqArray
Big Data Management of Whole-genome Sequence Variant Calls
Bioconductor-mirror/seqbias
Estimation of per-position bias in high-throughput sequencing data
Bioconductor-mirror/seqCNA
Copy number analysis of high-throughput sequencing cancer data
Bioconductor-mirror/SeqGSEA
Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating differential expression and splicing
Bioconductor-mirror/seqLogo
Sequence logos for DNA sequence alignments