Return RnaQuin isoforms

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Description

Return RnaQuin isoforms from data set created by AnaquinData.

Usage

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RnaQuin.isoforms(object, ...)
## S4 method for signature 'AnaquinData'
RnaQuin.isoforms(object)

Arguments

object

S4 object created by AnaquinData

...

Not used

Details

This function takes an AnaquinData object and return the RnaQuin isoform identifiers.

Value

Data frame with the isoforms and their input concentration. Return NULL if unavailable.

Author(s)

Ted Wong t.wong@garvan.org.au

Examples

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library(Anaquin)

#
# Data set generated by Cufflinks and Anaquin. described in Section 5.4.5.1 of
# the user guide.
#
data(UserGuideData_5.4.5.1)

data <- UserGuideData_5.4.5.1

# Sequin names
seqs <- row.names(data)

# Input concentration
input <- log2(data$InputConcent)

anaquin <- new("AnaquinData", analysis = 'Mixture',
                                  seqs = row.names(data),
                                 input = log2(data$InputConcent))
RnaQuin.isoforms(anaquin)