ratio: Return ratio

Description Usage Arguments Details Value Author(s) Examples

Description

Return ratio from data set created by AnaquinData.

Usage

1
2
3
ratio(object, ...)
## S4 method for signature 'AnaquinData'
ratio(object)

Arguments

object

S4 object created by AnaquinData

...

Not used

Details

This function takes an AnaquinData data set object and return its sequin ratio.

Value

List of sequin ratio for each sequin. Return NULL if unavailable.

Author(s)

Ted Wong [email protected]

Examples

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
13
14
15
16
17
18
19
20
data(UserGuideData_5.6.3)

# Sequin names
seqs <- row.names(UserGuideData_5.6.3)

# Expected log-fold
ratio <- UserGuideData_5.6.3$ExpLFC

# How the ROC curves are ranked
score <- 1-UserGuideData_5.6.3$Pval

# Classified labels (TP/FP)
label <- UserGuideData_5.6.3$Label

anaquin <- AnaquinData(analysis='PlotROC',
                           seqs=seqs,
                          ratio=ratio,
                          score=score,
                          label=label)
ratio(anaquin)

Anaquin documentation built on May 31, 2017, 11:24 a.m.