Nothing
Renaming of methods:
openWorkspace
-> open_diva_xml
, open_flowjo_xml
cytobankExperiment
-> open_cytobank_experiment
cytobank2GatingSet
-> cytobank_to_gatingset
parseWorkspace
-> flowjo_to_gatingset
, diva_to_gatingset
getSampleGroups
-> fj_ws_get_sample_groups
, diva_get_sample_groups
getSamples
-> fj_ws_get_samples
, diva_get_samples
getKeywords
-> fj_ws_get_keywords
getCompensationMatrices
-> ce_get_compensations
getTransformation
-> ce_get_transformations
compare.counts
-> gs_compare_cytobank_counts
Renaming of classes:
divaWorkspace
-> diva_workspace
flowJoWorkspace
-> flowjo_workspace
Add CytoML.par.set
, CytoML.par.get
for setting parameters in CytoML
namespace
gatingset_to_cytobank
export cytobank ML with attribute namespacesdiva_to_gatingset
to use compensation matrix from xml...
args from cytobank_to_gatingset
appropriately down to FCS parserGatingSet
during Diva parsingdiva_to_gatingset
to using flowjo_log_trans
instead of logtGml2_trans
gating.graphGML
lookup tailored gates by FCS name as well as file idgetSpilloverMat
used in gatingset_to_flowjo
sampNLoc
-> sample_names_from
in open_flowjo_xml
flowjo/cytobank/diva_to_gatingset
) now return GatingSet
based on cytoset
rather than ncdfFlowSet
trans
argument to cytobank_to_gatingset
to allow overriding of transformations from gatingML file (#76)gatingset_to_flowjo
now uses a docker image with a compiled converter: hub.docker.com/r/wjiang2/gs-to-flowjoflowjo_to_gatingset
searches for FCS files (#77)flowjo_to_gatingset
to include samples without gatesgatingset_to_flowjo
to take a path to a GatingSet
archive directorygating_graphGML
to replace gating.graphGML
method for openCyto::gating generic
ce_get_samples
, ce_get_panels
flowjo_to_gatingset
RGLab/cytolib#33stringsAsFactors=FALSE
in R 4.0GatingSetList
to merge_gs_list
experimental::filesystem
to boost::filesystem
in C++ FlowJo parserAny scripts or data that you put into this service are public.
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