gseaplot: visualize analyzing result of GSEA

Description Usage Arguments Value Author(s)

View source: R/gseAnalyzer.R

Description

plotting function for gseaResult

Usage

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gseaplot(gseaResult, geneSetID, by = "all", title = "", color = "black",
  color.line = "green", color.vline = "#FA5860")

Arguments

gseaResult

gseaResult object

geneSetID

geneSet ID

by

one of "runningScore" or "position"

title

plot title

color

color of line segments

color.line

color of running enrichment score line

color.vline

color of vertical line which indicating the maximum/minimal running enrichment score

Value

ggplot2 object

Author(s)

Yu Guangchuang


DOSE documentation built on Nov. 17, 2017, 12:58 p.m.