4.3 - Motif enrichment plots

In ELMER: Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes

library(ELMER)
library(DT)
library(dplyr)
library(BiocStyle)

Motif enrichment plot

Motif enrichment plot shows the enrichment levels for the selected motifs.

The plot shows the Odds Ratio (x axis) for the selected motifs with OR above 1.3 and lower boundary of OR above 1.1. The range shows the 95% confidence interval for each Odds Ratio

motif.enrichment.plot(motif.enrichment = "result/getMotif.hypo.motif.enrichment.csv", 
                      significant = list(OR = 1.5,lowerOR = 1.3), 
                      label = "hypo", 
                      save = FALSE)  

motif.enrichment.plot(motif.enrichment = "result/getMotif.hypo.motif.enrichment.csv", 
                      significant = list(OR = 1.5,lowerOR = 1.3), 
                      label = "hypo", 
                      summary = TRUE,
                      save = FALSE)  

ELMER documentation built on Nov. 8, 2020, 4:59 p.m.