Create a Table of Inbreeding Coefficient Estimates from PC-Relate Output
pcrelateReadInbreed is used to create a table of inbreeding coefficient estimates from the output of
The object containing the output from
A vector of IDs for samples to be included in the table. The default is NULL, which includes all samples in
Specifies a minimum value of the estimated inbreeding coefficient to include in the table; i.e. only individuals with an estimated inbreeding coefficient greater than
This function provides an easy way to make a table of estimated inbreeding coefficients.
Matthew P. Conomos
Conomos M.P., Reiner A.P., Weir B.S., & Thornton T.A. (2016). Model-free Estimation of Recent Genetic Relatedness. American Journal of Human Genetics, 98(1), 127-148.
pcrelate for the function that performs PC-Relate.
pcrelateReadKinship for the function that creates a table of pairwise kinship coefficient and IBD sharing probabilities from the same PC-Relate output file.
pcrelateMakeGRM for the function that creates a genetic relationship matrix (GRM) of pairwise kinship coefficient estimates from the same PC-Relate output file.