Description Usage Arguments Details Author(s) References See Also

View source: R/pcrelateReadKinship.R

`pcrelateReadKinship`

is used to create a table of pairwise kinship coefficient and IBD sharing probability (k0, k1, k2) estimates from the output of `pcrelate`

.
This function is deprecated; `pcrelate`

now returns this table as `kinBtwn`

.

1 2 | ```
pcrelateReadKinship(pcrelObj, scan.include = NULL, ibd.probs = TRUE,
kin.thresh = NULL)
``` |

`pcrelObj` |
The object containing the output from |

`scan.include` |
A vector of IDs for samples to be included in the table. The default is NULL, which includes all samples in |

`ibd.probs` |
Logical indicator of whether or not the output in |

`kin.thresh` |
Specifies a minimum value of the estimated kinship coefficient to include in the table; i.e. only pairs with an estimated kinship coefficient greater than |

This function provides an easy way to make a table of pairwise relatedness estimates.

Matthew P. Conomos

Conomos M.P., Reiner A.P., Weir B.S., & Thornton T.A. (2016). Model-free Estimation of Recent Genetic Relatedness. American Journal of Human Genetics, 98(1), 127-148.

`pcrelate`

for the function that performs PC-Relate.
`pcrelateReadInbreed`

for the function that creates a table of inbreeding coefficient estimates from the same PC-Relate output file.
`pcrelateMakeGRM`

for the function that creates a genetic relationship matrix (GRM) of pairwise kinship coefficient estimates from the same PC-Relate output file.

Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.