GenoGAM-methods: GenoGAM-methods

Description Usage Arguments Value Author(s) Examples

Description

The different accessor functions for the GenoGAM object

The 'positions' slot holds the positions of the fit in GPos format

The 'design' slot holds the formula of the fit

The 'fits' slot contains the fitted values of the model

The 'experimentDesign' slot contains the experimental design of the model as specified in the config file

Usage

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## S4 method for signature 'GenoGAM'
rowRanges(x)

## S4 method for signature 'GenoGAM'
design(object)

getFits(x)

## S4 method for signature 'GenoGAM'
getFits(x)

## S4 method for signature 'GenoGAM'
colData(x)

Arguments

x, object

A GenoGAM object.

Value

The respective slot

Author(s)

Georg Stricker georg.stricker@in.tum.de

Examples

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gg <- makeTestGenoGAM()
ranges <- rowRanges(gg)
gg <- makeTestGenoGAM()
des <- design(gg)
gg <- makeTestGenoGAM()
fits <- getFits(gg)
gg <- makeTestGenoGAM()
exdesign <- colData(gg)


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