GenoGAM-view: View the dataset

Description Usage Arguments Value Author(s) Examples

Description

Cbinding the columns all together and coercing to data.frame

Usage

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## S4 method for signature 'GenoGAM'
view(object, ranges = NULL, seqnames = NULL,
  start = NULL, end = NULL)

Arguments

object

A GenoGAM object

ranges

A GRanges object. Makes it possible to select regions by GRanges. Either ranges or seqnames, start and end must be supplied

seqnames

A chromosomes name. Either ranges or seqnames, start and end must be supplied

start

A start site. Either ranges or seqnames, start and end must be supplied

end

An end site. Either ranges or seqnames, start and end must be supplied

Value

A data.frame of the selected data.

Author(s)

Georg Stricker [email protected]

Examples

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gg <- makeTestGenoGAM()
gr <- GRanges("chrI", IRanges(1,40))
head(view(gg, gr))

GenoGAM documentation built on May 31, 2017, 2:27 p.m.