subsetByOverlaps-GenomicTiles-GRanges-method: Subset by overlaps method for 'GenomciTiles'
In GenoGAM: A GAM based framework for analysis of ChIP-Seq data
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Subsetting the GenomicTiles by a GRanges object
Usage
1
2
3
## S4 method for signature 'GenomicTiles,GRanges'
subsetByOverlaps(x, ranges, maxgap = -1L,
minoverlap = 0L, type = c("any", "start", "end", "within", "equal"), ...)
Arguments
x
A GenomicTiles object.
ranges
A GRanges object
maxgap, minoverlap, type
See ?findOverlaps in
the IRanges package for a description of these arguments.
...
Additional parameters
Value
A subsetted GenomicTiles object.
Author(s)
Georg Stricker [email protected]
Examples
1
2
3
gt <- makeTestGenomicTiles()
gr <- GRanges(c("chrI", "chrII"), IRanges(c(1, 120), c(40, 150)))
res <- subsetByOverlaps(gt, gr)
GenoGAM documentation built on May 2, 2018, 2:04 a.m.
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Description Usage Arguments Value Author(s) Examples
Description
Subsetting the GenomicTiles by a GRanges object
Usage
1 2 3 | ## S4 method for signature 'GenomicTiles,GRanges'
subsetByOverlaps(x, ranges, maxgap = -1L,
minoverlap = 0L, type = c("any", "start", "end", "within", "equal"), ...)
|
Arguments
x |
A |
ranges |
A |
maxgap, minoverlap, type |
See |
... |
Additional parameters |
Value
A subsetted GenomicTiles object.
Author(s)
Georg Stricker [email protected]
Examples
1 2 3 | gt <- makeTestGenomicTiles()
gr <- GRanges(c("chrI", "chrII"), IRanges(c(1, 120), c(40, 150)))
res <- subsetByOverlaps(gt, gr)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
As an Amazon Associate I earn from qualifying purchases.
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