Find overlap between mutations and a genomic region

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Description

Find the number of mutations that reside in genomic region and take surveyed area of genome into account.

Usage

1
intersect_with_region(vcf, surveyed, region)

Arguments

vcf

CollapsedVCF object with mutations

surveyed

GRanges object with regions of the genome that were surveyed

region

GRanges object with genomic region(s)

Value

A data.frame containing the overlapping mutations for a genomic region.

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