Track for the Nucleosome position

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Description

This track actually creates two tracks: it displays the position of the predicted nucleosomes as well as the standard error associated with each prediction and an histogram of the score.

Usage

1
NucleosomeTrack(PS, chr, gen="gen", scoreTrack=TRUE, scoreThreshold=0.05, name="PING", ...)

Arguments

PS

A data.frame or pingList. The output of postPING or PING.

chr

A character string for the chromosome name.

gen

An optional character string for the genome name.

scoreTrack

A logical. If set to FALSE, the track showing the histogram of the score is removed.

scoreThreshold

A numeric. Nucleosomes predicted with a score inferior to this threshold are removed.

name

A character string for the title of the track.

...

A list of supplemental argument that can be provided to the AnnotationTrack track constructor.

Value

This function returns a list containing an object of class AnnotationTrack and a DataTrack if scoreTrack is set to TRUE.

Author(s)

Renan Sauteraud

See Also

postPING plotSummary DataTrack AnnotationTrack plotTracks