Raw reads density track

Share:

Description

This track displays the start position of the forward and reverse reads used as input for the segmentation step

Usage

1
RawReadsTrack(ping, reads, chr, gen="gen", from=NULL, to=NULL, ...)

Arguments

ping

A pingList. The output of PING.

reads

An object of class GRanges. The reads used in the segmentation process.

chr

A character string for the chromosome name.

gen

An optional character string for the genome name.

from, to

Two numeric. A subset of the reads can be selected in order to speed up the computation.

...

Optional arguments (DisplayParameters) that can be passed on to the DataTrack. Refer to Gviz help and vignette for a list of arguments.

Value

This function returns an object of class DataTrack.

Author(s)

Renan Sauteraud

See Also

segmentPING plotSummary DataTrack plotTracks