A class that represents a Position Weight Matrix (PWM)

`id`

:a systematic ID given to this PWM, could include the source, version, etc

`name`

:the name of the transcription factor (TF) to which the PWM corresponds to

`pfm`

:Position Frequency Matrix (PFM) from which the PWM is derived

`prior.params`

:Defines prior frequencies of the four bases (A,C,G,T), a named vector. These will be added to individual values for the PFM and at the same time used as background probabilities

`pwm`

:Final Position Weight Matrix (PWM) constructed using prior.params with logarithm base 2

PWMEnrich documentation built on May 2, 2018, 4:20 a.m.

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