createPathoStat: Generates a PathoStat object from the PathoScope reports for...

Description Usage Arguments Value Examples

Description

Generates a PathoStat object from the PathoScope reports for further analysis using the interactive shiny app

Usage

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createPathoStat(input_dir = ".", sample_data_file = "sample_data.tsv",
    pathoreport_file_suffix = "-sam-report.tsv")

Arguments

input_dir

Directory where the tsv files from PathoScope are located

sample_data_file

Sample Data file with information about samples

pathoreport_file_suffix

PathoScope report files suffix

Value

pstat The pathostat object generated from the given tsv files

Examples

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example_data_dir <- system.file("example/data", package = "PathoStat")
pstat <- createPathoStat(input_dir=example_data_dir, 
    sample_data_file="sample_data.tsv")


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