pathostat: Build PathoStat-class object from its phyloseq component.

Description Usage Arguments Value Examples

View source: R/pathoStat.R

Description

Build PathoStat-class object from its phyloseq component.

Usage

1
pathostat(physeq1)

Arguments

physeq1

phyloseq object

Value

pstat The pathostat object generated from the given phyloseq object

Examples

1
2
3
4
rich_dense_biom  = system.file("extdata", "rich_dense_otu_table.biom", 
    package="phyloseq")
phyob <- phyloseq::import_biom(rich_dense_biom)
pstat_biom <- pathostat(phyob)

PathoStat documentation built on May 31, 2017, 3:07 p.m.

Search within the PathoStat package
Search all R packages, documentation and source code