displayGraph: displayGraph

Description Usage Arguments Value Author(s) Examples

Description

This method transmits the CytoscapeWindowClass's graph data, from R to Cytoscape: nodes, edges, node and edge attributes, and displays it in a window titled as specified by the objects 'title' slot. With large graphs, this transmission may take a while. The resulting view of the network in Cytoscape will need layout and vizmap rendering; layout so that all the nodes and edges can be seen; rendering so that data attributes can control the appearance of the the nodes and edges.

Usage

1

Arguments

obj

a CytoscapeWindowClass object.

Value

Nothing.

Author(s)

Tanja Muetze, Georgi Kolishovski, Paul Shannon

Examples

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  ## Not run: 
  # first, delete existing windows to save memory:
  deleteAllWindows(CytoscapeConnection())

  cw <- CytoscapeWindow ('displayGraph.test', graph=makeSimpleGraph())
  displayGraph (cw)
  layoutNetwork(cw, 'force-directed')
  redraw (cw)

## End(Not run)

RCy3 documentation built on Nov. 17, 2017, 1:22 p.m.