Get human KEGG pathway data and a gene expression matrix we obtain a matrix with the gene expression for only pathways given in input .

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Description

plotting_matrix creates a matrix of gene expression for pathways given by the user.

Usage

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plotting_cross_talk(DataMatrix, pathway, path_matrix)

Arguments

DataMatrix

gene expression matrix (eg.TCGA data)

pathway

pathway data as provided by getKEGGdata

path_matrix

output of the function GE_matrix

Value

a plot for pathway cross talk

Examples

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mt<-plotting_cross_talk(DataMatrix=tumo[,1:2],pathway=path,path_matrix=list_path_plot)