R/lpsdata.R

In TSCAN: Tools for Single-Cell Analysis

#' Sinlge-cell RNA-seq data for BMDC cells before and after LPS stimulation 
#'
#' The dataset contains 16776 rows and 131 columns. Each row represent a gene and each column represent a single cell. This dataset is a subset of single-cell RNA-seq data provided by GEO GSE48968. Only unstimulated cells and cells after 6h of LPS stimulation are retained for the purpose of demonstration. Genes which have raw expression values of greater than zero in at least one cell are retained. For the original dataset please refer to GSE48968 on GEO (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE48968).
#'
#' @format A matrix with 16776 rows and 131 variables
#' @references Shalek, A. K., Satija, R., Shuga, J., Trombetta, J. J., Gennert, D., Lu, D., ... & Regev, A. (2014). Single-cell RNA-seq reveals dynamic paracrine control of cellular variation. Nature.
#' @source \url{http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE48968}
#' @name lpsdata
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