celdaHeatmap-celda_C-method: Heatmap for celda_C

Description Usage Arguments Value See Also Examples

Description

Renders an expression heatmap to visualize 'celda_C()' results. Features to include in the heatmap must be supplied.

Usage

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## S4 method for signature 'celda_C'
celdaHeatmap(counts, celdaMod, featureIx, ...)

Arguments

counts

Integer matrix. Rows represent features and columns represent cells. This matrix should be the same as the one used to generate 'celdaMod'.

celdaMod

Celda object of class 'celda_C'.

featureIx

Integer vector. Indices of features to plot, such the top features from a differential expression analysis.

...

Additional parameters.

Value

list A list containing dendrograms and the heatmap grob

See Also

'celda_C()' for clustering cells and 'celdaTsne()' for generating 2-dimensional coordinates

Examples

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celda documentation built on June 9, 2020, 2 a.m.