celdaHeatmap-celda_CG-method: Heatmap for celda_CG

Description Usage Arguments Value See Also Examples

Description

Renders an expression heatmap to visualize 'celda_CG()' results. The top 'nfeatures' for each module will be included in the heatmap.

Usage

1
2
## S4 method for signature 'celda_CG'
celdaHeatmap(counts, celdaMod, nfeatures = 25, ...)

Arguments

counts

Integer matrix. Rows represent features and columns represent cells. This matrix should be the same as the one used to generate. 'celdaMod'.

celdaMod

Celda object of class 'celda_CG'.

nfeatures

Integer. Maximum number of features to select for each module. Default 25.

...

Additional parameters.

Value

A list containing dendrograms and the heatmap grob

See Also

'celda_CG()' for clustering features and cells and 'celdaTsne()' for generating 2-dimensional coordinates.

Examples

1
2

celda documentation built on June 9, 2020, 2 a.m.