celdaProbabilityMap-celda_CG-method: Probability map for a celda_CG model

Description Usage Arguments Value See Also Examples

Description

Renders probability and relative expression heatmaps to visualize the relationship between features and cell populations or cell populations and samples.

Usage

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## S4 method for signature 'celda_CG'
celdaProbabilityMap(
  counts,
  celdaMod,
  level = c("cellPopulation", "sample"),
  ...
)

Arguments

counts

Integer matrix. Rows represent features and columns represent cells. This matrix should be the same as the one used to generate 'celdaMod'.

celdaMod

Celda object of class 'celda_CG'.

level

Character. One of 'cellPopulation' or 'sample'. 'cellPopulation' will display the absolute probabilities and relative normalized expression of each module in each cell population. 'sample' will display the absolute probabilities and relative normalized abundance of each cell population in each sample. Default 'cellPopulation'.

...

Additional parameters.

Value

A grob containing the specified plots

See Also

'celda_CG()' for clustering features and cells

Examples

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celda documentation built on June 9, 2020, 2 a.m.