In cellscape: Explores single cell copy number profiles in the context of a single cell tree

CellScape is a visualization tool for integrating single cell phylogeny with genomic content to clearly display evolutionary progression and tumour heterogeneity.

Installation

To install CellScape, type the following commands in R:

# try http:// if https:// URLs are not supported
if (!requireNamespace("BiocManager", quietly=TRUE))
    install.packages("BiocManager")
BiocManager::install("cellscape")

Examples

Run the examples by:

example("cellscape")

Documentation

To view the documentation for CellScape, type the following command in R:

?cellscape

or:

browseVignettes("cellscape") 

References

CellScape was developed at the Shah Lab for Computational Cancer Biology at the BC Cancer Research Centre.

cellscape documentation built on Nov. 8, 2020, 5:02 p.m.