dagPeptides: Class '"dagPeptides"'

Description Objects from the Class Slots


An object of class "dagPeptides" represents the information of peptides.

Objects from the Class

Objects can be created by calls of the form new("dagPeptides", data, peptides, upstreamOffset, downstreamOffset, type).



Object of class "data.frame" The details of the input sequences. It includes the columns: IDs, anchorAA (anchor Amino Acid), anchorPos (anchor Position), peptide (protein peptide), anchor, upstream, downstream (peptides in given upstream and downstream offset from anchor)


code"matrix" The input peptides. Each column contains one peptide in that position


"numeric" The upstream offset from anchor


"numeric" The downstream offset from anchor


"charactger" ID type of inputs

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