groupClade method

Description

group selected clade

Usage

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groupClade(object, node, group_name = "group", ...)

## S4 method for signature 'raxml'
groupClade(object, node, group_name = "group")

## S4 method for signature 'apeBootstrap'
groupClade(object, node, group_name = "group")

## S4 method for signature 'codeml_mlc'
groupClade(object, node, group_name = "group")

## S4 method for signature 'hyphy'
groupClade(object, node, group_name = "group")

## S4 method for signature 'beast'
groupClade(object, node, group_name = "group")

## S4 method for signature 'codeml'
groupClade(object, node, group_name = "group")

## S4 method for signature 'gg'
groupClade(object, node, group_name)

## S4 method for signature 'ggplot'
groupClade(object, node, group_name)

## S4 method for signature 'jplace'
groupClade(object, node, group_name = "group")

## S4 method for signature 'nhx'
groupClade(object, node, group_name = "group")

## S4 method for signature 'phylip'
groupClade(object, node, group_name = "group")

## S4 method for signature 'phylo'
groupClade(object, node, group_name = "group")

## S4 method for signature 'paml_rst'
groupClade(object, node, group_name = "group")

## S4 method for signature 'phangorn'
groupClade(object, node, group_name = "group")

## S4 method for signature 'r8s'
groupClade(object, node, group_name = "group",
  tree = "TREE")

Arguments

object

supported objects, including phylo, paml_rst, codeml_mlc, codeml, jplace, beast, hyphy

node

a internal node or a vector of internal nodes

group_name

name of the group, 'group' by default

...

additional parameter

tree

which tree selected

Value

group index


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