phangorn-class: Class "phangorn" This class stores ancestral sequences inferred from 'phangorn'

Description

Class "phangorn" This class stores ancestral sequences inferred from 'phangorn'

Slots

fields

available attributes

phylo

phylo object

seq_type

one of "NT" and "AA"

tip_seq

sequences of tips

ancseq

ancenstral sequences

subs

sequence substitution

AA_subs

Amino acid sequence substitution

extraInfo

extra information

Author(s)

Guangchuang Yu http://guangchuangyu.github.io

See Also

paml_rst


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