phyPML: treeAnno.pml

Description Usage Arguments Value Author(s)

Description

tree annotation of sequence substitution by comparing to parent node

Usage

1
phyPML(pmlTree, type = "ml")

Arguments

pmlTree

tree in pml object, output of phangorn::optim.pml

type

one of 'ml' and 'bayes' for inferring ancestral sequences

Value

phangorn object

Author(s)

Yu Guangchuang



Search within the ggtree package
Search all R packages, documentation and source code

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.