treeAnno.pml

Description

tree annotation of sequence substitution by comparing to parent node

Usage

1
phyPML(pmlTree, type = "ml")

Arguments

pmlTree

tree in pml object, output of phangorn::optim.pml

type

one of 'ml' and 'bayes' for inferring ancestral sequences

Value

phangorn object

Author(s)

Yu Guangchuang

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