write.jplace: write.jplace

Description Usage Arguments Value Author(s) Examples

Description

generate jplace file

Usage

1
write.jplace(nwk, data, outfile)

Arguments

nwk

tree in newick format

data

annotation data

outfile

jplace output file

Value

jplace file

Author(s)

ygc

Examples

1
2
3
4
5
tree <- system.file("extdata", "pa.nwk", package="ggtree")
data <- read.csv(system.file("extdata", "pa_subs.csv", package="ggtree"),
                stringsAsFactor=FALSE)
outfile <- tempfile()
write.jplace(tree, data, outfile)


Search within the ggtree package
Search all R packages, documentation and source code

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.