generate jplace file
write.jplace(nwk, data, outfile)
tree in newick format
jplace output file
tree <- system.file("extdata", "pa.nwk", package="ggtree")
data <- read.csv(system.file("extdata", "pa_subs.csv", package="ggtree"),
outfile <- tempfile()
write.jplace(tree, data, outfile)
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