Plots wordcloud.

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Description

Plots word cloud of mutated genes or altered cytobands with size proportional to the event frequency.

Usage

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geneCloud(input, minMut = 3, col = NULL, top = NULL,
  genesToIgnore = NULL, ...)

Arguments

input

an MAF or GISTIC object generated by read.maf or readGistic

minMut

Minimum number of samples in which a gene is required to be mutated.

col

vector of colors to choose from.

top

Just plot these top n number of mutated genes.

genesToIgnore

Ignore these genes.

...

Other options passed to wordcloud

Value

nothing.

Examples

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laml.input <- system.file("extdata", "tcga_laml.maf.gz", package = "maftools")
laml <- read.maf(maf = laml.input, useAll = FALSE)
geneCloud(input = laml, minMut = 5)

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