R/mock_mgF.R

In metagenomeFeatures: Exploration of marker-gene sequence taxonomic annotations

#' Example mgFeatures class object
#'
#' Example \link{mgFeatures-class} object generated using the
#' \link{annotateFeatures} \link[=MgDb-class]{MgDb-class} method. The dataset contains
#' the OTU ids and Greengenes database version 13.5 ids. Specifically, the OTU
#' centers came from a mock community dataset from the study Bokulich et al.
#' 2013, the OTU ids were extracted from a biom file downloaded from QIITA
#' (https://qiita.ucsd.edu).
#'
#' Bokulich, Nicholas A., et al. "Quality-filtering vastly improves diversity
#' estimates from Illumina amplicon sequencing." Nature methods 10.1 (2013):
#' 57-59.
#'
#' @format mgFeatures
#'
#' @source
#' \url{https://qiita.ucsd.edu}
#'
#' @examples
#' data(mock_mgF)
"mock_mgF"