tests/testthat/test_00_helper_functions.r

In ndexr: NDEx R client library

################################################################################
## Authors:
##   Florian Auer [florian.auer@med.uni-goettingen.de]
##
## History:
##   Created on 05 February 2017 by Auer
##     
## Description:
##    Tests for Helper functions:
##    Encode parameters in urls (ndex_helper_encodeParams)
##    Get the right api object (ndex_helper_getApi)
##
## Usage:
##  devtools::test(filter='00_*')
################################################################################

library(ndexr)
context('Helper funtions')



test_that('Encode parameters in urls (ndex_helper_encodeParams)', {
  ## replace
  url = "http://en.wikipedia.org/#NETWORKID#/index.php"
  params = list(    network=list(    tag="#NETWORKID#", method="replace"))
  values = c(network='aaaa-bb-cc-dddddd', bla='This is not used!')
  result = "http://en.wikipedia.org/aaaa-bb-cc-dddddd/index.php"
  expect_identical(ndex_helper_encodeParams(url, params=params, values), result, info='Encode params and values (replace)')
  
  values = c(bla='This is not used!')
  expect_error(ndex_helper_encodeParams(url, params=params, values), info='Encode params and (no) values (replace) -> error')
  
  params = list(    network=list(    tag="#NETWORKID#", method="replace", default="xxxx-xx-xx-xxxxxx"))
  result = "http://en.wikipedia.org/xxxx-xx-xx-xxxxxx/index.php"
  expect_identical(ndex_helper_encodeParams(url, params=params, values), result, info='Encode params and default values (replace)')
  
  ## parameter
  url = "http://en.wikipedia.org/w/index.php"
  params = list(    network=list(    tag="network", method="parameter"))
  values = c(network='aaaa-bb-cc-dddddd', bla='This is not used!')
  result = "http://en.wikipedia.org/w/index.php?network=aaaa-bb-cc-dddddd"
  expect_identical(ndex_helper_encodeParams(url, params=params, values), result, info='Encode params and values (parameter)')
  
  values = c(bla='This is not used!')
  expect_error(ndex_helper_encodeParams(url, params=params, values), info='Encode params and (no) values (parameter) -> error')
  
  params = list(    network=list(    tag="network", method="parameter", optional=TRUE))
  expect_identical(ndex_helper_encodeParams(url, params=params, values), url, info='Encode (optional) params and (no) values (parameter)')
  
  params = list(    network=list(    tag="network", method="parameter", default="xxxx-xx-xx-xxxxxx"))
  result = "http://en.wikipedia.org/w/index.php?network=xxxx-xx-xx-xxxxxx"
  expect_identical(ndex_helper_encodeParams(url, params=params, values), result, info='Encode params and (default) values (parameter)')
  
  values = c(network='aaaa-bb-cc-dddddd', bla='This is not used!')
  result = "http://en.wikipedia.org/w/index.php?network=aaaa-bb-cc-dddddd"
  expect_identical(ndex_helper_encodeParams(url, params=params, values), result, info='Encode params and (default) values (parameter, do not use default value)')
  
  ## append
  url = "http://en.wikipedia.org/w/index.php"
  params = list(    network=list(    method="append"))
  values = c(network='aaaa-bb-cc-dddddd', bla='This is not used!')
  result = "http://en.wikipedia.org/w/index.php/aaaa-bb-cc-dddddd"
  expect_identical(ndex_helper_encodeParams(url, params=params, values), result, info='Encode params and values (append)')
  
  values = c(bla='This is not used!')
  expect_error(ndex_helper_encodeParams(url, params=params, values), info='Encode params and (no) values (append) -> error')
  
  params = list(    network=list(    method="append", optional=TRUE))
  expect_identical(ndex_helper_encodeParams(url, params=params, values), url, info='Encode (optional) params and (no) values (append)')
  
  params = list(    network=list(    method="append", default="xxxx-xx-xx-xxxxxx"))
  result = "http://en.wikipedia.org/w/index.php/xxxx-xx-xx-xxxxxx"
  expect_identical(ndex_helper_encodeParams(url, params=params, values), result, info='Encode params and (default) values (append)')
  
  values = c(network='aaaa-bb-cc-dddddd', bla='This is not used!')
  result = "http://en.wikipedia.org/w/index.php/aaaa-bb-cc-dddddd"
  expect_identical(ndex_helper_encodeParams(url, params=params, values), result, info='Encode params and (default) values (append, do not use default value)')
  
})

test_that('Get the right api object (ndex_helper_getApi)', {
  con = ndex_connect()
  expect_identical(ndex_helper_getApi(con,'serverStatus'), con$ndexConf$api$serverStatus, info='The server status should work, else establishing an connection should have thrown an error!')
  expect_identical(ndex_helper_getApi(con,'network$summary$get'), con$ndexConf$api$network$summary$get, info='Testing some more complex query..')
  expect_error(ndex_helper_getApi(con,'network$aspect$create'), con$ndexConf$api$network$aspect$create, info='There should be no create function for aspects!!')
})