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R/classdef.R
In pathVar: Methods to Find Pathways with Significantly Different Variability
setClass("geneDistributionSet",representation(tablePway="data.table",NAPways="character",genesInPway="list",refProb="table",refCounts="table",pwayCounts="list",numOfClus="numeric",varStat="character",genesInClus="numeric",var="numeric"))
setClass("geneDistributionSet2",representation(tablePway="data.table",NAPways="character",genesInPway="list",groups="factor",groupNames="character",var1="numeric",var2="numeric",varStat="character"))
setClass("geneDistributionSet3",representation(tablePway="data.table",NAPways="character",genesInPway1="list",genesInPway2="list",pwayCounts1="list",pwayCounts2="list",groups="factor",groupNames="character",var1="numeric",var2="numeric",varStat="character"))
setClass("significantPathway",representation(genesInSigPways1="list",sigCatPerPway="list",thresPValue="numeric"))
setClass("significantPathway2",representation(genesInSigPways1="list",thresPValue="numeric"))
setClass("significantPathway3",representation(genesInSigPways1="list",genesInSigPways2="list",sigCatPerPway="list",thresPValue="numeric"))
setClass("geneSet",representation(genes1="character",genes2="character",genesAll="character"))
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pathVar documentation built on Nov. 8, 2020, 5:47 p.m.
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setClass("geneDistributionSet",representation(tablePway="data.table",NAPways="character",genesInPway="list",refProb="table",refCounts="table",pwayCounts="list",numOfClus="numeric",varStat="character",genesInClus="numeric",var="numeric"))
setClass("geneDistributionSet2",representation(tablePway="data.table",NAPways="character",genesInPway="list",groups="factor",groupNames="character",var1="numeric",var2="numeric",varStat="character"))
setClass("geneDistributionSet3",representation(tablePway="data.table",NAPways="character",genesInPway1="list",genesInPway2="list",pwayCounts1="list",pwayCounts2="list",groups="factor",groupNames="character",var1="numeric",var2="numeric",varStat="character"))
setClass("significantPathway",representation(genesInSigPways1="list",sigCatPerPway="list",thresPValue="numeric"))
setClass("significantPathway2",representation(genesInSigPways1="list",thresPValue="numeric"))
setClass("significantPathway3",representation(genesInSigPways1="list",genesInSigPways2="list",sigCatPerPway="list",thresPValue="numeric"))
setClass("geneSet",representation(genes1="character",genes2="character",genesAll="character"))
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R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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