calculateFPKM: Calculate fragments per kilobase of exon per million reads...

Description Usage Arguments Value Examples

Description

Calculate fragments per kilobase of exon per million reads mapped (FPKM) values for expression from counts for a set of features.

Usage

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calculateFPKM(object, effective_length)

Arguments

object

an SCESet object

effective_length

vector of class "numeric" providing the effective length for each feature in the SCESet object

Value

Matrix of FPKM values.

Examples

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data("sc_example_counts")
data("sc_example_cell_info")
example_sceset <- newSCESet(countData = sc_example_counts)
effective_length <- rep(1000, 2000)
fpkm(example_sceset) <- calculateFPKM(example_sceset, effective_length)


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