filter: Return 'SingleCellExperiment' with cells matching conditions.

Description Usage Arguments Value Examples

Description

Subsets the columns (cells) of a SingleCellExperiment based on matching conditions in the rows of colData(object).

Usage

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filter(object, ...)

## S4 method for signature 'SingleCellExperiment'
filter(object, ...)

Arguments

object

A SingleCellExperiment object.

...

Additional arguments to be passed to dplyr::filter to act on colData(object).

Value

An SingleCellExperiment object.

Examples

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data("sc_example_counts")
data("sc_example_cell_info")
example_sce <- SingleCellExperiment(
assays = list(counts = sc_example_counts), 
colData = sc_example_cell_info)
example_sce_treat1 <- filter(example_sce, Treatment == "treat1")

scater documentation built on Nov. 17, 2017, 10:54 a.m.