norm_fpkm: Accessors for the 'norm_fpkm' (normalised fragments per...

Description Usage Arguments Value Author(s) Examples

Description

The norm_fpkm element of the arrayData slot in an SCESet object holds a matrix containing normalised fragments per kilobase of exon per million reads mapped (FPKM) values. It has the same dimensions as the 'exprs' and 'counts' elements, which hold the transformed expression data and count data, respectively.

Usage

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norm_fpkm(object)

norm_fpkm(object) <- value

## S4 method for signature 'SCESet'
norm_fpkm(object)

## S4 replacement method for signature 'SCESet,matrix'
norm_fpkm(object)<-value

## S4 method for signature 'SCESet'
norm_fpkm(object)

## S4 replacement method for signature 'SCESet,matrix'
norm_fpkm(object) <- value

Arguments

object

a SCESet object.

value

a matrix of class "numeric"

Value

a matrix of normalised FPKM data

Author(s)

Davis McCarthy

Examples

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data("sc_example_counts")
data("sc_example_cell_info")
example_sceset <- newSCESet(countData = sc_example_counts)
norm_fpkm(example_sceset)

scater documentation built on May 31, 2017, 3:08 p.m.

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