summarizeTable: Summarize SCtkExperiment

Description Usage Arguments Value Examples

View source: R/miscFunctions.R

Description

Creates a table of summary metrics from an input SCtkExperiment.

Usage

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summarizeTable(inSCE, useAssay = "counts", expressionCutoff = 1700)

Arguments

inSCE

Input SCtkExperiment object. Required

useAssay

Indicate which assay to summarize. Default is "counts"

expressionCutoff

Count number of samples with fewer than expressionCutoff genes. The default is 1700.

Value

A data.frame object of summary metrics.

Examples

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data("mouseBrainSubsetSCE")
summarizeTable(mouseBrainSubsetSCE)

singleCellTK documentation built on June 26, 2018, 10 a.m.