Nothing
as_tibble
for pvclust
(2020-06-22, Mon)as.phylo
and as.treedata
methods for pvclust
object (2020-06-21, Sun)read.phyloxml
(2019-12-05, Thu)offspring
return integer(0)
instead of throw error if input .node
is a tip (2019-11-21, Thu)phyPML
to as.treedata.pml
(2019-10-01, Tue)as.phylo
method for igraph
(only work with tree graph) (2019-09-28, Sat)nodeid
and nodelab
methods for converting between node number and labels (2019-08-09, Fri)parent
, 'ancestor,
child,
offspringand
rootnodemethods for
treedata` (2019-08-07, Wed)read.mega_tabular
to parse MEGA Tabular output (2019-07-16, Tue)read.mega
to parse MEGA NEXUS (actually BEAST compatible)rename_taxa
now use 1st column as key and 2nd column as value by default (2019-05-28, Tue)tree_subset
to specify group_name
and enable to incorporate root.edge
by setting root_edge = TRUE
(2019-05-27, Mon)full_join
method for phylo object (2019-05-22, Wed)ape::root.phylo
for compatibility (2019-05-20, Mon)rescale_tree
from ggtree
(2019-01-11, Fri)MRCA
methods for phylo
and treedata
(2019-01-10, Thu)root
method from ggtree::reroot
(2018-12-28, Fri)root
for importing ape::root
generictibble
v=2.0.0 (2018-11-29, Thu)read.jplace
compatible with output of TIPars (2018-08-07, Tue)as.phylo.ggtree
and as.treedata.ggtree
(2018-07-19, Thu)tree_subset
by using rlang::quo
and import utils::head
and utils::tail
(2018-05-24, Thu)tree_subset
methods contributed by @tbradley1013drop.tip
works with tree@extraInfo
(2018-05-23, Wed)groupOTU.treedata
(2018-05-23, Wed)phylo
and treedata
object, now
ggtree
can be used to visualize all tree-like graph. (2018-04-23, Mon)seq_len
and seq_along
read.jtree
and write.jtree
functionsread.nhx
from ggtree <2016-12-06, Tue>as.phylo.treedata
to access phylo
from treedata
object <2016-12-06, Tue>as.treedata.phylo
to convert phylo
to treedata
object <2016-12-06, Tue>treedata
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