Nothing
## ----echo=F-------------------------------------------------------------------
### get knitr just the way we like it
knitr::opts_chunk$set(
message = FALSE,
warning = FALSE,
error = FALSE,
tidy = FALSE,
cache = FALSE
)
## ---- eval = FALSE------------------------------------------------------------
# system.file("full_doc", package="ASSISTant")
## -----------------------------------------------------------------------------
library(ASSISTant)
data(LLL.SETTINGS)
str(LLL.SETTINGS)
## -----------------------------------------------------------------------------
scenario <- LLL.SETTINGS$scenarios$S0
designParameters <- list(prevalence = LLL.SETTINGS$prevalences$table1,
mean = scenario$mean,
sd = scenario$sd)
designA <- ASSISTDesign$new(trialParameters = LLL.SETTINGS$trialParameters,
designParameters = designParameters)
print(designA)
## -----------------------------------------------------------------------------
result <- designA$explore(numberOfSimulations = 50, showProgress = FALSE)
analysis <- designA$analyze(result)
print(designA$summary(analysis))
## -----------------------------------------------------------------------------
scenario <- LLL.SETTINGS$scenarios$S1
trueParameters <- list(prevalence = LLL.SETTINGS$prevalences$table1,
mean = scenario$mean,
sd = scenario$sd)
result <- designA$explore(numberOfSimulations = 50,
trueParameters = trueParameters, showProgress = FALSE)
analysis <- designA$analyze(result)
print(designA$summary(analysis))
## -----------------------------------------------------------------------------
scenario <- LLL.SETTINGS$scenarios$S2
trueParameters <- list(prevalence = LLL.SETTINGS$prevalences$table1,
mean = scenario$mean,
sd = scenario$sd)
result <- designA$explore(numberOfSimulations = 50,
trueParameters = trueParameters, showProgress = FALSE)
analysis <- designA$analyze(result)
print(designA$summary(analysis))
## -----------------------------------------------------------------------------
scenario <- LLL.SETTINGS$scenarios$S3
trueParameters <- list(prevalence = LLL.SETTINGS$prevalences$table1,
mean = scenario$mean,
sd = scenario$sd)
result <- designA$explore(numberOfSimulations = 50,
trueParameters = trueParameters, showProgress = FALSE)
analysis <- designA$analyze(result)
print(designA$summary(analysis))
## -----------------------------------------------------------------------------
scenario <- LLL.SETTINGS$scenarios$S4
trueParameters <- list(prevalence = LLL.SETTINGS$prevalences$table1,
mean = scenario$mean,
sd = scenario$sd)
result <- designA$explore(numberOfSimulations = 50,
trueParameters = trueParameters, showProgress = FALSE)
analysis <- designA$analyze(result)
print(designA$summary(analysis))
## -----------------------------------------------------------------------------
scenario <- LLL.SETTINGS$scenarios$S5
trueParameters <- list(prevalence = LLL.SETTINGS$prevalences$table1,
mean = scenario$mean,
sd = scenario$sd)
result <- designA$explore(numberOfSimulations = 50,
trueParameters = trueParameters, showProgress = FALSE)
analysis <- designA$analyze(result)
print(designA$summary(analysis))
## -----------------------------------------------------------------------------
scenario <- LLL.SETTINGS$scenarios$S6
trueParameters <- list(prevalence = LLL.SETTINGS$prevalences$table1,
mean = scenario$mean,
sd = scenario$sd)
result <- designA$explore(numberOfSimulations = 50,
trueParameters = trueParameters, showProgress = FALSE)
analysis <- designA$analyze(result)
print(designA$summary(analysis))
## -----------------------------------------------------------------------------
scenario <- LLL.SETTINGS$scenarios$S7
trueParameters <- list(prevalence = LLL.SETTINGS$prevalences$table1,
mean = scenario$mean,
sd = scenario$sd)
result <- designA$explore(numberOfSimulations = 50,
trueParameters = trueParameters, showProgress = FALSE)
analysis <- designA$analyze(result)
print(designA$summary(analysis))
## -----------------------------------------------------------------------------
scenario <- LLL.SETTINGS$scenarios$S8
trueParameters <- list(prevalence = LLL.SETTINGS$prevalences$table1,
mean = scenario$mean,
sd = scenario$sd)
result <- designA$explore(numberOfSimulations = 50,
trueParameters = trueParameters, showProgress = FALSE)
analysis <- designA$analyze(result)
print(designA$summary(analysis))
## -----------------------------------------------------------------------------
scenario <- LLL.SETTINGS$scenarios$S9
trueParameters <- list(prevalence = LLL.SETTINGS$prevalences$table1,
mean = scenario$mean,
sd = scenario$sd)
result <- designA$explore(numberOfSimulations = 50,
trueParameters = trueParameters, showProgress = FALSE)
analysis <- designA$analyze(result)
print(designA$summary(analysis))
## -----------------------------------------------------------------------------
scenario <- LLL.SETTINGS$scenarios$S10
trueParameters <- list(prevalence = LLL.SETTINGS$prevalences$table1,
mean = scenario$mean,
sd = scenario$sd)
result <- designA$explore(numberOfSimulations = 50,
trueParameters = trueParameters, showProgress = FALSE)
analysis <- designA$analyze(result)
print(designA$summary(analysis))
## -----------------------------------------------------------------------------
scenario <- LLL.SETTINGS$scenarios$S0
designParameters <- list(prevalence = LLL.SETTINGS$prevalences$table2,
mean = scenario$mean,
sd = scenario$sd)
designA <- ASSISTDesign$new(trialParameters = LLL.SETTINGS$trialParameters,
designParameters = designParameters)
print(designA)
## -----------------------------------------------------------------------------
result <- designA$explore(numberOfSimulations = 50, showProgress = FALSE)
analysis <- designA$analyze(result)
print(designA$summary(analysis))
## -----------------------------------------------------------------------------
scenario <- LLL.SETTINGS$scenarios$S1
trueParameters <- list(prevalence = LLL.SETTINGS$prevalences$table2,
mean = scenario$mean,
sd = scenario$sd)
result <- designA$explore(numberOfSimulations = 50, trueParameters = trueParameters,
showProgress = FALSE)
analysis <- designA$analyze(result)
print(designA$summary(analysis))
## -----------------------------------------------------------------------------
scenario <- LLL.SETTINGS$scenarios$S2
trueParameters <- list(prevalence = LLL.SETTINGS$prevalences$table2,
mean = scenario$mean,
sd = scenario$sd)
result <- designA$explore(numberOfSimulations = 50, trueParameters = trueParameters,
showProgress = FALSE)
analysis <- designA$analyze(result)
print(designA$summary(analysis))
## -----------------------------------------------------------------------------
scenario <- LLL.SETTINGS$scenarios$S3
trueParameters <- list(prevalence = LLL.SETTINGS$prevalences$table2,
mean = scenario$mean,
sd = scenario$sd)
result <- designA$explore(numberOfSimulations = 50, trueParameters = trueParameters,
showProgress = FALSE)
analysis <- designA$analyze(result)
print(designA$summary(analysis))
## -----------------------------------------------------------------------------
scenario <- LLL.SETTINGS$scenarios$S4
trueParameters <- list(prevalence = LLL.SETTINGS$prevalences$table2,
mean = scenario$mean,
sd = scenario$sd)
result <- designA$explore(numberOfSimulations = 50, trueParameters = trueParameters,
showProgress = FALSE)
analysis <- designA$analyze(result)
print(designA$summary(analysis))
## -----------------------------------------------------------------------------
scenario <- LLL.SETTINGS$scenarios$S5
trueParameters <- list(prevalence = LLL.SETTINGS$prevalences$table2,
mean = scenario$mean,
sd = scenario$sd)
result <- designA$explore(numberOfSimulations = 50, trueParameters = trueParameters,
showProgress = FALSE)
analysis <- designA$analyze(result)
print(designA$summary(analysis))
## -----------------------------------------------------------------------------
scenario <- LLL.SETTINGS$scenarios$S6
trueParameters <- list(prevalence = LLL.SETTINGS$prevalences$table2,
mean = scenario$mean,
sd = scenario$sd)
result <- designA$explore(numberOfSimulations = 50, trueParameters = trueParameters,
showProgress = FALSE)
analysis <- designA$analyze(result)
print(designA$summary(analysis))
## -----------------------------------------------------------------------------
scenario <- LLL.SETTINGS$scenarios$S7
trueParameters <- list(prevalence = LLL.SETTINGS$prevalences$table2,
mean = scenario$mean,
sd = scenario$sd)
result <- designA$explore(numberOfSimulations = 50, trueParameters = trueParameters,
showProgress = FALSE)
analysis <- designA$analyze(result)
print(designA$summary(analysis))
## -----------------------------------------------------------------------------
scenario <- LLL.SETTINGS$scenarios$S8
trueParameters <- list(prevalence = LLL.SETTINGS$prevalences$table2,
mean = scenario$mean,
sd = scenario$sd)
result <- designA$explore(numberOfSimulations = 50, trueParameters = trueParameters,
showProgress = FALSE)
analysis <- designA$analyze(result)
print(designA$summary(analysis))
## -----------------------------------------------------------------------------
scenario <- LLL.SETTINGS$scenarios$S9
trueParameters <- list(prevalence = LLL.SETTINGS$prevalences$table2,
mean = scenario$mean,
sd = scenario$sd)
result <- designA$explore(numberOfSimulations = 50, trueParameters = trueParameters,
showProgress = FALSE)
analysis <- designA$analyze(result)
print(designA$summary(analysis))
## -----------------------------------------------------------------------------
scenario <- LLL.SETTINGS$scenarios$S10
trueParameters <- list(prevalence = LLL.SETTINGS$prevalences$table2,
mean = scenario$mean,
sd = scenario$sd)
result <- designA$explore(numberOfSimulations = 50, trueParameters = trueParameters,
showProgress = FALSE)
analysis <- designA$analyze(result)
print(designA$summary(analysis))
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