inst/AmyloGram/output_format.md

In AmyloGram: Prediction of Amyloid Proteins

1. Names of the input sequences (if provided). May be sorted alphabetically.
2. Probability of amyloidogenic properties (according to the AmyloGram model). May be sorted.
3. Prediction: is a sequence an amyloid? The prediction is based on the cut-off (see 5).
4. Download results in the .csv format.
5. Cut-off adjustment. The cut-off value must be between 0 and 1. It may be altered to achieve desired specificity or sensitivity.
6. Values of sensitivity, specificity and Matthew's Correlation Coefficient (MCC) for the specified cut-off value.

AmyloGram documentation built on May 1, 2019, 10:06 p.m.