R/intraFMM.R

Defines functions intraFMM

Documented in intraFMM

intraFMM <-
function(d,n,B=0,DB=c(0,0), JC=FALSE,CI_Boot, type="bca", plot=FALSE){
  if(is.numeric(d)){d=d}else{stop("d is not numeric")}
  if(is.numeric(n)){n=n}else{stop("n is not numeric")}
  if(B==0&& plot==TRUE){stop("please select a number of bootstrap repititions for the plot")}
  if(B%%1==0){B=B}else{stop("B is not an integer")}
  if(DB[1]%%1==0 && DB[2]%%1==0 ){DB=DB}else{stop("At least one entry in DB is not an integer")}
  if(length(d)==length(n)){}else{stop("Input vectors do not have the same length")}
  
  d1=d/n
  
  
  estimate=function(X){
    var_dat=var(X)
    pd_mean=mean(X)
    foo=function(rho){
      corr=matrix(c(1,rho,rho,1),2)
      prob=pmvnorm(lower=c(-Inf,-Inf),upper=c(qnorm(pd_mean),qnorm(pd_mean)),mean=c(0,0),corr=corr)
      return((prob- pd_mean^2)+1/length(d1)*sum(1/n)*(pd_mean-prob)-var_dat)
    }
  
    Est<-list(Original =uniroot(foo,c(0,1))$root)
    
  }
  
  
  Estimate_Standard<- estimate(d1)
  
  if(DB[1]!=0){
    IN=DB[1]
    OUT=DB[2]
    
    theta1=NULL
    theta2=matrix(ncol = OUT, nrow=IN)
    for(i in 1:OUT){
      N<-length(d1)
      Ib<-sample(N,N,replace=TRUE)  ## sampling with replacement
      Db<-d1[Ib] 
      try(theta1[i]<-estimate(Db)$Original, silent = TRUE)
      
      for(c in 1:IN){
        Ic<-sample(N,N,replace=TRUE)  ## sampling with replacement
        Dc<-Db[Ic] 
        try( theta2[c,i]<-estimate(Dc)$Original, silent = TRUE)
        
      }
    }
    Boot1<- mean(theta1, na.rm = TRUE)
    Boot2<- mean(theta2, na.rm = TRUE)
    BC<- 2*Estimate_Standard$Original -Boot1
    DBC<- (3*Estimate_Standard$Original-3*Boot1+Boot2)
    
    Estimate_DoubleBootstrap<-list(Original = Estimate_Standard$Original, Bootstrap=BC, Double_Bootstrap=DBC, oValues=theta1, iValues=theta2)
    
  }
  
  
  
  if(B>0){ 
    N<-length(n)
    D<- matrix(ncol=1, nrow=N,d1)
    
    BCA=function(data, indices){
      
      d <- data[indices,]
      
      tryCatch(estimate(d)$Original,error=function(e)NA)
      
    }
    
    boot1<- boot(data = D, statistic = BCA, R=B)
    
    
    Estimate_Bootstrap<-list(Original = boot1$t0, Bootstrap=2*boot1$t0 - mean(boot1$t,na.rm = TRUE),bValues=boot1$t )
    
    
    if(missing(CI_Boot)){Estimate_Bootstrap=Estimate_Bootstrap}else{
      if(type=="norm"){Conf=(boot.ci(boot1,conf=CI_Boot,type = type)$normal[2:3])}
      if(type=="basic"){Conf=(boot.ci(boot1,conf=CI_Boot,type = type)$basic[4:5])}
      if(type=="perc"){Conf=(boot.ci(boot1,conf=CI_Boot,type = type))$percent[4:5]}
      if(type=="bca"){Conf=(boot.ci(boot1,conf=CI_Boot,type = type))$bca[4:5]}
      if(type=="all"){Conf=(boot.ci(boot1,conf=CI_Boot,type = type))}
      
      Estimate_Bootstrap<-list(Original = boot1$t0, Bootstrap=2*boot1$t0 - mean(boot1$t,na.rm = TRUE),CI_Boot=Conf,bValues=boot1$t )
      
    }
    
    if(plot==TRUE){
      Dens<-density(boot1$t, na.rm = TRUE)
      XY<-cbind(Dens$x,Dens$y)
      label<-data.frame(rep("Bootstrap density",times=length(Dens$x)))
      Plot<-cbind(XY,label)
      colnames(Plot)<-c("Estimate","Density","Label")
      
      
      SD<-cbind(rep(boot1$t0,times=length(Dens$x)), Dens$y,rep("Standard estimate",times=length(Dens$x)))
      colnames(SD)<-c("Estimate","Density","Label")
      BC<-cbind(rep(Estimate_Bootstrap$Bootstrap,times=length(Dens$x)), Dens$y,rep("Bootstrap corrected estimate",times=length(Dens$x)))
      colnames(BC)<-c("Estimate","Density","Label")
      
      Plot<-rbind(Plot,SD, BC)
      Plot$Estimate<-as.numeric(Plot$Estimate)
      Plot$Density<- as.numeric(Plot$Density)
      
      Estimate<-Plot$Estimate
      Density<-Plot$Density
      Label<-Plot$Label
      P<-ggplot()
      P<-P+with(Plot, aes(x=Estimate, y=Density, colour=Label)) +
        geom_line()+
        scale_colour_manual(values = c("black", "red", "orange"))+
        theme_minimal(base_size = 15) +
        ggtitle("Bootstrap Density" )+
        theme(plot.title = element_text(hjust = 0.5),legend.position="bottom",legend.text = element_text(size = 12),legend.title = element_text( size = 12), legend.justification = "center",axis.text.x= element_text(face = "bold", size = 12)) 
      print(P)
      
    }
    
    
    
    
  }
  
  if(JC==TRUE){
    N=length(d1)
    Test=NULL
    for(v in 1:N){
      d2<-d1[-v]
      
      try(Test[v]<-estimate(d2)$Original)
      
    }
    
    Estimate_Jackknife<-list(Original = Estimate_Standard$Original, Jackknife=(N*Estimate_Standard$Original-(N-1)*mean(Test)))
    
    
  }  
  
  if(B>0){return(Estimate_Bootstrap)}
  if(JC==TRUE){return(Estimate_Jackknife)}
  if(DB[1]!=0){return(Estimate_DoubleBootstrap)}
  if(B==0 && JC==FALSE && DB[1]==0){return(Estimate_Standard)}
  
  
}

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AssetCorr documentation built on May 5, 2021, 5:07 p.m.