NEWS.md

In BDgraph: Bayesian Structure Learning in Graphical Models using Birth-Death MCMC

BDgraph NEWS

BDgraph Version 2.72

• Function predict.bdgraph() is added to the package.

• Function posterior.predict() is added to the package.

• In functions bdgraph(), bdgraph.mpl(), and bdgraph.dw(), option g.prior is changed from 0.5 to 0.2.

BDgraph Version 2.71

• Function auc() is added to the package.

• In function plotroc(), option calibrate is added.

• Data set churn is removed.

BDgraph Version 2.70

• Bug fixed for plotroc() function.

• In function plotroc(), options color, typeline, size, xlab, and ylab, and some more options are added.

BDgraph Version 2.69

• In function bdgraph.sim(), options type="t" and type="alternative-t" are added.

• In function bdgraph.sim(), option nu is added for the cases type="t" and type="alternative-t".

• Bug fixed for compare() function.

• In function compare(), option est is replaced.

• In function plotroc(), option est is replaced.

BDgraph Version 2.68

• In functions bdgraph(), bdgraph.mpl(), and bdgraph.dw(), option verbose is added.

• In function plotcoda(), option verbose is added.

• A new file is added to the vignette of package.

• Bug fixed for bdgraph() function with option method = gcgm and algorithm = rj-dmh.

BDgraph Version 2.65

• Function bdgraph.dw() is added to the package.

• Function bdw.reg() is added to the package.

• In functions graph.sim() and bdgraph.sim(), option graph = "smallworld" is added.

• In functions plot.graph() and plot.bdgraph(), options layout, vertex.size, vertex.color, and vertex.label.dist are added.

• In function bdgraph.sim(), options range.mu and range.dispersion are added.

BDgraph Version 2.64

• Function roc() is added to the package.
• Function conf.mat() is added to the package.
• Function conf.mat.plot() is added to the package.

• Function sparsity() is added to the package.

• Functions ddweibull(), pdweibull(), qdweibull(), rdweibull() are added to the package.

BDgraph Version 2.63

• In functions bdgraph(), bdgraph.mpl(), and bdgraph.ts(), option print is removed.
• In function bdgraph.sim(), option type="dw" is added.

• In function bdgraph.sim(), option type="discrete" is changed to type="count".

• Bug fixed for gnorm() function.

• README is added to the package.

BDgraph Version 2.62

• Bug fixed related to the class function; class(.) == *

BDgraph Version 2.61

• Bug fixed related to the C stack by Fortran functions.
• Function bf() is added to the package.
• Function adj2link() is added to the package.
• Function link2adj() is added to the package.
• Function bdgraph.ts() is removed.

BDgraph Version 2.60

• Function precision() is added to the package.
• Function covariance() is added to the package.

BDgraph Version 2.58

• Bug fixed for compare() function.

• Function get_graph() is added to the package and used inside function compare().

• Functions get_g_prior(), get_g_start(), get_S_n_p(), get_K_start(), and get_cores() are added to the package and used inside function bdgraph().

BDgraph Version 2.57

• In function compare(), option est4 is added.

BDgraph Version 2.56

• In functions rgwish(), rgcwish() and gnorm(), option adj.g is changed to adj.

• In function compare(), option sim.obj is changed to target.

• In function compare(), option bdgraph.obj is changed to est.
• In function compare(), option bdgraph.obj2 is changed to est2.

• In function compare(), option bdgraph.obj3 is changed to est3.

• In function plotroc(), option sim.obj is changed to target.

• In function plotroc(), option bdgraph.obj is changed to est.
• In function plotroc(), option bdgraph.obj2 is changed to est2.
• In function plotroc(), option bdgraph.obj3 is changed to est3.

• In function plotroc(), option bdgraph.obj4 is changed to est4.

• Bug fixed for bdgraph() function with option method = gcgm.

• Functions summary.bdgraph, plot.bdgraph, and print.bdgraph are modified.

BDgraph Version 2.53

• Files configure and configure.ac are removed and files Makevars and Makevars.win are modified accordingly.

• In functions bdgraph(), bdgraph.mpl(), and bdgraph.ts(), option save.all is changed to save.

• In functions bdgraph() and bdgraph.mpl(), option multi.update is changed to jump.

• In functions bdgraph() and bdgraph.ts(), option prior.df is changed to df.prior.

• In function pgraph(), option adj_g is changed to adj.

BDgraph Version 2.52

• Option threshold is added to function rgwish().
• Option threshold is added to function bdgraph().
• Option not.cont is added to function bdgraph().

• In function compare(), option colnames is changed to main.

• In functions bdgraph() and bdgraph.mpl(), option g.space is removed. Instead user can use option g.prior.

• Bug fixed for bdgraph.ts() function.

• Data set churn is added.

BDgraph Version 2.51

• Bug fixed In functions rgwish() and rcgwish().
• vignette is added to the package.

BDgraph Version 2.47

• Function graph.sim is added to the package.
• Function plot.graph is added to the package.

BDgraph Version 2.46

• Function rmvnorm is added to the package.

BDgraph Version 2.44

• Functions bdgraph.ts, rcwish, and rcgwish are added to the package.

BDgraph Version 2.42

• Function local_rates_ggm_mpl in cpp is added for bdgraph.mpl function.
• configure and configure.ac are added to the package for Makevars file.
• Functions bdgraph.ts, rcwish, and rcgwish are removed from the package.

BDgraph Version 2.41

• Option dgm-binary is added to function bdgraph() which is for running Hill-Climbing algorihtm for binary data.
• configure and configure.ac are added to configure checks of C++ codes.

BDgraph Version 2.38

• Function bdgraph.mpl() is added to the package, which is based on Marginal Pseudo-Likelihood estimation.
• In the algorithm gcgm, step copula are implimented in parallel using OpenMP in C++.
• Function bdgraph.ts is implimented in parallel using OpenMP in C++.
• New reference related to the ratio of normalizing constant is added to manual.

BDgraph Version 2.40

• Option g.prior is added to function bdgraph(), for prior distribution of the graph.
• Option cores is added to function bdgraph(), for determining the number of cores to use for parallel execution.
• Function transfer() is added to the package.

BDgraph Version 2.36

• The BDMCMC algorithms are implimented in parallel using OpenMP in C++.

BDgraph Version 2.28

• The Title in Description is changed.
• Functions bdgraph.ts(), rgcwish(), and rcwish() are added to the package.

BDgraph Version 2.24

• Function phat() is changed to plinks().
• Function prob() is changed to pgraph().
• Function log_Ig() is changed to gnorm().

BDgraph Version 2.23

• Function I.g() is chenged to log_Ig() and it is implemented in C++.

BDgraph Version 2.20

• Reversible jump MCMC algorithm is added to the bdgraph() fonction.

BDgraph Version 2.19

• The Title in Description is changed.
• Function I.g is added.

BDgraph documentation built on Dec. 28, 2022, 1:54 a.m.