Nothing
print.BooleanNetworkCollection <- function(x, ...)
{
print.ProbabilisticBooleanNetwork(x, ...)
}
# Custom print function for class ProbabilisticBooleanNetwork
print.ProbabilisticBooleanNetwork <- function(x, ...)
{
cat("Probabilistic Boolean network with",length(x$genes),"genes\n\n")
cat("Involved genes:\n",paste(x$genes,collapse=" "),"\n\n",sep="")
cat("Transition functions:\n")
mapply(function(gene,interaction)
{
cat("\nAlternative transition functions for gene ",gene,":\n",sep="")
# print original expressions read from the files (if available)
lapply(interaction,function(func)
{
cat(gene," = ",func$expression,sep="")
if (!is.null(func$probability) || !is.null(func$error))
{
cat(" (")
if (!is.null(func$probability))
{
cat(" probability: ",func$probability,sep="")
if (!is.null(func$error))
cat(", ")
}
if (!is.null(func$error))
cat("error: ",func$error,sep="")
cat(")")
}
cat("\n")
})
},
x$genes,x$interactions)
if (sum(x$fixed != -1) > 0)
{
cat("\nKnocked-out and over-expressed genes:\n")
mapply(function(gene,fixed)
{
if (fixed != -1)
cat(gene," = ",fixed,"\n",sep="")
},
x$genes,x$fixed)
}
return(invisible(x))
}
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