LSRA_MCMC_sim: Internal SRA MCMC CPP code

Description Usage Arguments Author(s)

View source: R/RcppExports.R

Description

Rcpp version of R code

Usage

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LSRA_MCMC_sim(nits, pars, JumpCV, adapt, parLB, parUB, R0ind, inflind,
  slpind, RDind, nyears, maxage, M, Mat_age, Wt_age, Chist_a, Umax, h, CAA,
  CAAadj, sigmaR)

Arguments

nits

number of iterations

pars

vector of parameters

JumpCV

jump cv vector

adapt

adapt vector

parLB

lower bounds

parUB

upper bounds

R0ind

index for R0

inflind

index for inflection

slpind

index for slope

RDind

index for recruitment deviations

nyears

number of projection years

maxage

maximum age

M

Natural mortality

Mat_age

A vector of maturity at age

Wt_age

A vector of weight at age

Chist_a

A vector of historical catch observations (nyears long) going back to unfished conditions

Umax

A numeric value representing the maximum harvest rate for any age class (rejection of sims where this occurs)

h

steepness of SRR

CAA

A matrix nyears (rows) by nages (columns) of catch at age (age 1 to maxage in length)

CAAadj

internal parameter

sigmaR

A numeric value representing the prior standard deviation of log space recruitment deviations

Author(s)

A. Hordyk


DLMtool documentation built on Dec. 6, 2019, 9:06 a.m.