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README.md
In FishResp: Analytical Tool for Aquatic Respirometry
FishResp: R package for Aquatic Respirometry
Description
The R package 'FishResp' is designed to calculate metabolic rate of aquatic organisms measured using an intermittent-flow respirometry approach. Raw respirometry data can be imported from:
- PumpResp (open-source pump controller by FishResp)
- SensResp (open-source DO meter by FishResp).
- AutoResp (by LoligoSystems)
- Pyro Oxygen Logger (by PyroScience)
- OxyView (by PreSens)
- AquaResp (free software)
- Q-box Aqua (by QubitSystems)
The idea behind FishResp, an analysis pipeline and case studies are described in the academic publication by Morozov et al. (2019). Technical information about R functions and demo data can be found in Reference Manual. Brief descriptions of the R package 'FishResp' and other open-source tools for aquatic respirometry are located at the website fishresp.org.
Installation
The stable version of the ‘FishResp’ package can be installed from CRAN:install.packages("FishResp").
Alternativelly, download the latest release from GitHub and install using the following command:
devtools::install_github("embedded-sergey/FishResp-Rpackage@*release").
If you are not familiar with the R language, please check out the graphical implementation of the R package: FishRespGUI.
Notes
To cite FishResp please refer to: "Morozov, S., McCairns, R.J.S., Merila, J. (2019) FishResp: R package and GUI application for analysis of aquatic respirometry data. Conserv Physiol 7(1): coz003; https://doi.org/10.1093/conphys/coz003".
To see the list of changes made in various versions of the R package, open the file 'NEWS.md'.
If you find a bug, please report about it on the FishResp forum or the GitHub repository.
People and organisations who developed, contributed or financed the ‘FishResp’ project are listed here.
Try the FishResp package in your browser
Any scripts or data that you put into this service are public.
FishResp documentation built on Sept. 18, 2022, 5:06 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
FishResp: R package for Aquatic Respirometry
Description
The R package 'FishResp' is designed to calculate metabolic rate of aquatic organisms measured using an intermittent-flow respirometry approach. Raw respirometry data can be imported from:
- PumpResp (open-source pump controller by FishResp)
- SensResp (open-source DO meter by FishResp).
- AutoResp (by LoligoSystems)
- Pyro Oxygen Logger (by PyroScience)
- OxyView (by PreSens)
- AquaResp (free software)
- Q-box Aqua (by QubitSystems)
The idea behind FishResp, an analysis pipeline and case studies are described in the academic publication by Morozov et al. (2019). Technical information about R functions and demo data can be found in Reference Manual. Brief descriptions of the R package 'FishResp' and other open-source tools for aquatic respirometry are located at the website fishresp.org.
Installation
The stable version of the ‘FishResp’ package can be installed from CRAN:install.packages("FishResp").
Alternativelly, download the latest release from GitHub and install using the following command:
devtools::install_github("embedded-sergey/FishResp-Rpackage@*release").
If you are not familiar with the R language, please check out the graphical implementation of the R package: FishRespGUI.
Notes
To cite FishResp please refer to: "Morozov, S., McCairns, R.J.S., Merila, J. (2019) FishResp: R package and GUI application for analysis of aquatic respirometry data. Conserv Physiol 7(1): coz003; https://doi.org/10.1093/conphys/coz003".
To see the list of changes made in various versions of the R package, open the file 'NEWS.md'.
If you find a bug, please report about it on the FishResp forum or the GitHub repository.
People and organisations who developed, contributed or financed the ‘FishResp’ project are listed here.
Try the FishResp package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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