R/getfolderstructure.R

In GGIR: Raw Accelerometer Data Analysis

getfolderstructure = function(datadir = c(),
                              referencefnames = c()) {
  
  filelist = isfilelist(datadir)
  if (filelist == FALSE) {
    fnamesfull = dir(datadir, recursive = TRUE, full.names = TRUE, pattern = "[.](csv|bin|Rda|wav|cw|gt3)")
  } else {
    fnamesfull = datadir
  }
  fullfilenames = foldername = rep("",length(referencefnames))
  if (length(fnamesfull) > 0) {
    fnamesshort = apply(
      X = as.matrix(fnamesfull),
      MARGIN = 1,
      FUN = function(X)
        basename(X)
    )
    foldername_new = apply(
      X = as.matrix(fnamesfull),
      MARGIN = 1,
      FUN = function(X)
        basename(dirname(X))
    )
    for (i in 1:length(referencefnames)) {
      index_match = which(fnamesshort == referencefnames[i])
      if (length(index_match) > 0 & referencefnames[i] %in% c("", " ", NA) == FALSE) {
        fullfilenames[i] = fnamesfull[index_match]
        foldername[i] = foldername_new[index_match]
      }
    }
  }
  invisible(list(fullfilenames = fullfilenames, foldername = foldername))
}