create.missingness.matrix: Create family matrix of data missingness

In Haplin: Analyzing Case-Parent Triad and/or Case-Control Data with SNP Haplotypes

Create family matrix of data missingness

Description

Help function that checks the family structure, based on IDs and provided data in .ped file, and then creates a matrix with families, where each indiv. has TRUE/FALSE value, depending on whether they have or not genetic data.

Usage

create.missingness.matrix(
  data.in = stop("No data given!", call. = FALSE),
  new.ids = stop("No IDs given", call. = FALSE)
)

Arguments

data.in	The data object (in format as the output of genDataRead); note that the design of the data is assumed to be triad.
new.ids	A list with pedIndex and ids, as generated by f.check.unique.ids.

Value

A matrix where each member of the family has TRUE or FALSE (whether they have any genetic data)

Haplin documentation built on May 20, 2022, 5:07 p.m.